Scoping
Objectives, design, risks & analysis plan
Data Analysis & Support
Made for you if you need
- Major time savings on analysis and formatting
- Expertise without internal ressources
- Clear visualizations of complex datasets
- Interpretable results ready for publication
- Major time savings on analysis and formatting
- Expertise without internal ressources
- Clear visualizations of complex datasets
- Interpretable results ready for publication
Where we make a difference
We handle end-to-end analysis: from experimental design to interpretation, with multi-omic integration (bulk, single-cell, spatial, 3D) and tools tailored to your experimental design.
- Multiscale & iterative approach
- QC, standardization, and statistics aligned with design
- 1D/3D integration: RNA-seq, ATAC-seq, ChIP-seq, Hi-C, etc.
- Interpretation sessions, trade-offs, final figures
- Publication-ready deliverables
- SVG/PNG/Tiff figures ready for publication
- Reports with pipelines, parameters, versions
- “Methods” folder (FAIR, full traceability)
Some concrete examples
RNA-seq + ATAC-seq + Hi-C
Linking regulation and 3D structure to explain a phenotype; figures and analytical logic ready for publication.
Single-cell multimodal
scRNA-seq/scATAC-seq: annotation, trajectories, batch integration; exploration via dedicated app.
Critical re-analysis
Prepare a response to reviewers; audit, recommendations, and additional figures.
Each analysis is conducted with precision and in accordance with the highest research standards, using state-of-the-art bioinformatics tools.
- Tracking & validation
- Versioning
- Exports
GeneSys, the collaborative space
Track progress, comment, validate, and assemble your panel figures. GeneSys centralizes scripts, parameters and streamlines exchanges until delivery.
What's included and how it works
Included
Deliverables
Terms
- QC, standardization, customized statistics
- 1D/3D integration (bulk & single-cell)
- Visualizations & exploration interfaces
- Reports, notebooks, figures
- SVG/PNG/PDF exports + FAIR README
- GeneSys access, test sets
- Packages + T&M for iterations
- Weekly update, SLA, collaborative space
- Ownership of deliverables & transfer
Included
- QC, standardization, customized statistics
- 1D/3D integration (bulk & single-cell)
- Visualizations & exploration interfaces
Deliverables
- Reports, notebooks, figures
- SVG/PNG/PDF exports + FAIR README
- GeneSys access, test sets
Terms
- Packages + T&M for iterations
- Weekly update, SLA, collaborative space
- Ownership of deliverables & transfer
Designed for research,
built for results
- Complete picture of your biology
We analyze and interconnect your omics data (NGS, mass spectrometry, etc.) to help advance both fundamental and applied research.
- Analyses adapted to your project
Each pipeline is designed to match the specific needs of your experiment — from RNA-seq to Hi-C — with complete traceability and adaptability.
- Results reusable and traceable
Our workflows guarantee Findable, Accessible, Interoperable, and Reusable (FAIR) data, from experimental design to results delivery.
Interested in developing similar expertise internally?
4 steps to get things done quickly and efficiently
A clear, efficient journey, from first contact to final delivery.
1- Scoping
Objectives, design, risks & analysis plan
2- Pre-processing & QC
Cleaning, normalization, statistical choices
3- Integration & interpretation
Multi-omics, visualizations
4- Delivery & transfer
Figures, notebooks, methods file
A clear, efficient journey,
from first contact to final delivery.
4 steps to get things done quickly and efficiently
Pre-processing & QC
Cleaning, normalization, statistical choices
Multi-omics, visualizations
Delivery & transfer
Figures, notebooks, methods file
Consulting
Experimental design
& methodology
Secure your choices upstream: sample sizes, depth, controls, risks. Supported by a framework note and analysis plan.
Funding
Partnership & co-writing of funding applications
A boost for your ANR/ERC/NIH applications: methods/analysis sections, workflow diagrams, milestones & budgets, letter of commitment. Option offered in addition to data analysis.
We help you strengthen your project with expert bioinformatics guidance
From experimental design to data analysis workflows, our advisory services make your research more robust, reproducible, and impactful.
- Methodological support and review for grant proposals or publications (ANR, ERC, NIH)
- Help with results valorization (figures, narrative strategy, multi-scale integration)
- Support for experimental design (conditions, sample numbers, sequencing dept)
- Definition of robust, realistic, and reproducible analysis plans and workflows
- Guidance on omics technology selection (RNA-seq, single-cell, Hi-C, etc.)
- Audit of existing pipelines and critical review of scripts or results
Ready to turn your raw data into results?
Unlock its value